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Nota biograficzna:

lipiec 2019 - - adiunkt w Katedrze Inżynierii i Analizy Eksploracyjnej Danych Politechniki Śląskiej w Gliwicach.

luty 2019 - czerwiec 2019 - asystent naukowo-dydaktyczny w Zakładzie Analizy Eksploracyjnej Danych Politechniki Śląskiej w Gliwicach.

luty 2018 - styczeń 2019 - asystent naukowy, Max-Planck Institute for Infection Biology, Department of Immunology.



Stopnie naukowe:

16.04.2019 - Uzyskanie stopnia doktora nauk technicznych w dziedzinie Biocybernetyka i Inżynieria Biomedyczna, specjalizacja Bioinformatyka. Temat rozprawy "Zastosowanie modelowania matematycznego oddziaływań genetycznych oraz metod integratywnej analizy danych w badaniach typu GWAS o mało licznych próbach". Recenzenci: prof. dr hab. inż. Małgorzata Kotulska, prof. dr hab. n med. Rafał Dziadziuszko.
ipiec 2019 - - adiunkt w Katedrze Inżynierii i Analizy Eksploracyjnej Danych Politechniki Śląskiej w Gliwicach.

luty 2019 - czerwiec 2019 - asystent naukowo-dydaktyczny w Zakładzie Analizy Eksploracyjnej Danych Politechniki Śląskiej w Gliwicach.

luty 2018 - styczeń 2019 - asystent naukowy, Max-Planck Institute for Infection Biology, Department of Immunology.



Stopnie naukowe:

16.04.2019 - Uzyskanie stopnia doktora nauk technicznych w dziedzinie Biocybernetyka i Inżynieria Biomedyczna, specjalizacja Bioinformatyka. Temat rozprawy "Zastosowanie modelowania matematycznego oddziaływań genetycznych oraz metod integratywnej analizy danych w badaniach typu GWAS o mało licznych próbach". Recenzenci: prof. dr hab. inż. Małgorzata Kotulska, prof. dr hab. n med. Rafał Dziadziuszko.

2012 - uzyskanie tytułu magistra na kierunku Biotechnologia, specjalizacja Bioinformatyka.

2011 - uzyskanie tytułu inżyniera na kierunku Biotechnologia, specjalizacja Bioinformatyka.



staże naukowe:

luty - kwiecień 2012 - trzymiesięczny staż naukowy w Health Protection Agency, Wielka Brytania (obecnie Public Health England).



stypendia:

październik 2015 - wrzesień 2016 - Stypendium "Naukowcy Przyszłości" przyznawane przez Dziekana Wydziału Automatyki, Elektroniki i Informatyki.

2012/2013 - 2013/2014 - Stypendium "DoktoRis" Program stypendialny na rzecz innowacyjnego Śląska. Stypendium przyznawane z funduszy Unijnych przez Marszałka woj. Śląskiego.



kursy naukowe:

lipiec 2019 Warwick University, UK; Introduction to Immunology

lipiec 2016 University of Washington, Seattle, USA; Population genetic data analysis, Network and pathway analysis of omic data, Bayesian statistics for genetics. (stypendium University of Washington)

lipiec 2016 CREAL research center, Barcelona, Spain; "Uncertainty Analysis for Low Dose Research"

lipiec 2014 University of Washington, Seattle, USA; Quantitative genetics, Statistical & quantitative genetics of disease (stypendium University of Washington)

grudzień 2012 University Paris-Sud, Instytut Curie, France; "Inter-individual variability of radiation-sensitivity: Mechanisms and Biomarkers".

Rozwiń/Zwiń



Zainteresowania naukowe:

Teaching:

- Applied Statistics

- Statistical Learning

- Markov Models

- Statistical inference

- Introduction to statistics

- Modelling of Biosystems

- Introduction to programming

Datacamp administrator at Department of Data Science and Engineering (https://www.datacamp.com/).

I encourage students to participate in courses available on the Datacamp platform. If interested, please contact me by email.
eaching:

- Applied Statistics

- Statistical Learning

- Markov Models

- Statistical inference

- Introduction to statistics

- Modelling of Biosystems

- Introduction to programming

Datacamp administrator at Department of Data Science and Engineering (https://www.datacamp.com/).

I encourage students to participate in courses available on the Datacamp platform. If interested, please contact me by email.

Rozwiń/Zwiń



Lista publikacji:

1. Zyla J., Marczyk M., Polanska J.: Reproducibility of Finding Enriched Gene Sets in Biological Data Analysis. In: Fdez-Riverola F., Mohamad M., Rocha M., De Paz J., Pinto T. (eds) 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. PACBB 2017. Advances in Intelligent Systems and Computing, vol 616. p. 146-154 (2017) Springer, Cham ISBN:978-3-319-60815-0

2. Zyla J, Marczyk M, Polanska J: Sensitivity, Specificity and Prioritization of Gene Set Analysis When Applying Different Ranking Metrics. In 10th International Conference on Practical Applications of Computational Biology & Bioinformatics, PACBB'16, 1-3 June 2016, Sevilla, Spain. Advances in Intelligent Systems and Computing, vol. 477, p.61-69, Eds. M. Saberi Mohamad, P.M. Rocha, F. Fdez-Riverola, J.F. Domínguez Mayo, F.J. De Paz, Springer International Publishing 2016, ISBN: 978-3-319-40125-6

3. Zyla J, Badie C, Alsbeih G, Polanska J: Multigene P-value Integration Based on SNPs Investigation for Seeking Radiosensitivity Signatures, Bioinformatics and Biomedical Engineering, Lecture Notes in Computer Science, vol. 9656, pp. 125-134, 4th International Work-Conference on Bioinformatics and Biomedical Engineering IWBBIO 2016, Granada,Spain, 20-22.04.2016, (eds.): F. Ortuño and I. Rojas, ISBN 978-3-319-31743-4, DOI: 10.1007/978-3-319-31744-1_12

4. Zyla J. Badie C. Alsbeih G. Polanska J: Modelling of Genetic Interactions in GWAS Reveals More Complex Relations between Genotype and Phenotype. Proceedings of 5th International Conference on Bioinformatics Models, Methods and Algorithms, Eds. Oscar Pastor, Christine Sinoquet, Guy Plantier, Tanija Schultz, Ana Fred and Hugo Gamboa, pages: 204-208, ISBN:978-989-758-012-3. BIOSTEC/Bioinformatics 2014, 03-07.03.2014 Angers, FRANCE

5. Zyla J. Finnon P. Bulman R. Bouffler S. Badie C. Polanska J: Seeking for Genetic Signature of Radiosensitivity - Methods for data analysis. International Work-Conference on Bioinformatics and Biomedical Engineering IWBBIO 2013, p.79-86. Eds. F. Ortuno, I. Rojas ISBN: 978-84-15814-13-9, 18-20.03.2013 Granada, SPAIN

6. Zyla J. Finnon P. Bulman R. Bouffler S. Badie C. Polanska J: Investigation for genetic signature of radiosensitivity - data analysis. In Advances in Intelligent Systems and Computing, vol. 242 "Man-Machine Interactions 3", Eds. Gruca A, Czachorski T, Kozielski S, p: 219-227. Springer Berlin Heidelberg 2014. ISBN: 978-3-319-02308-3. ICMMI 2013, 22-25.10.2013 Brenna, Poland

7. Kamila Szumala, Joanna Zyla: Effect size for unsupervised pathway enrichment analysis in scRNA-Sequencing. Symposium of the Polish Bioinformatics Society 2023 (PTBI). Book of Abstracts p.33

8. Zyla J, Jelitto-Górska M, Prażuch W, Durawa A, Szurowska E, Dziadziuszko R, Rzyman W, Widłak P, Polanska J: Machine learning model outcome integration for multi-platform data in lung cancer investigation. Computational oncology and personalized medicine - crossing borders, connecting science. COPM2023, Gliwice, April 26th, 2023. Book of abstracts. Conference programme / Krukiewicz Katarzyna [i in.] (red.), 2023, Politechnika Śląska, s.15-15

9. Szumała Kamila, Marczyk Michał, Żyła Joanna: Evaluation of R software packages for fitting Gaussian mixture model to biological data, In: Computational oncology and personalized medicine - crossing borders, connecting science. COPM2023, Gliwice, April 26th, 2023. Book of abstracts. Conference programme / Krukiewicz Katarzyna[i in.](eds.), 2023, Politechnika Śląska, pp. 12-12

10. Ochocki, M., Zyla, J.: Normalization of scRNA-Seq and its influence to dimensionality reduction visualisation. Symposium of Polish Bioinformatics Society 2022. Book of abstracts, p. 46. 14-16.09.2022, Warsaw, Poland

11. Szumala K., Zyla J:Transcriptomic information captured in pathway activation scoring methods in single cell RNA-SEQ data analysis, Gliwice Scientific Meetings (GSN) 2022, 18-19.11.2022, Gliwice, Poland, p.144

12. Mrukwa A., Zyla J.: THE IMPACT OF SOCIO-ECONOMIC STATE OF SOCIETY ON COVID-19 DEVELOPMENT, XXIV Gliwice Scientific Meeting 2020, p.57

13. G. O’Brien, L. Cruz Garcia, N. Brown, R. Finnon, J. Zyla, J. Polanska, C. Badie: Tracking Sfpi1/PU.1 and Kras mutations in murine acute myeloid leukaemia: role in radiation leukaemogenesis. European Radiation Research 2018, 44th Annual Meeting of the European Radiation Research Society, August 21-25, Pécs, Hungary

14. Zyla J., Danek A., Labaj P., Polanska J.: iK-means clustering in RNA-Seq data analysis of complex experiment design structure. Book of abstracts p.27, Computational Approached in Precision Medicine, 2017, 27-28 July, Vienna, Austria

15. Manning G, Cruz Garcia L., Manola K., Pagoni M., Brown N., Finnon R., Zyla J., Polanska J. and Badie C.: Tracking Kras mutations in human and murine acute myeloid leukaemia: role in radiation leukaemogenesis. Book of abstracts of 43rd Annual Meeting of the European Radiation Research Society, p.376, Essen, Gemany (17-21.09.2017)

16. Papiez A, Zyla J, Binczyk F, Polanska J: Drosophila melanogaster RNA-Seq analysis by k-means clustering with adaptive initial conditions, XXI Gliwickie Spotkania Naukowe 2017, 17-18.11.2017, Gliwice, Polska, Book of Abstracts, p.135.

17. Zyla J., Kabacik S., Manning G., Finnon P., Wakil S., Alsbeih G., Badie C., Polanska J.: Genetic factors in radiation-induced gamma-H2AX phosphorylation and in silico based identification of SNPs influencing its response level. 4th International Symposium on the System of Radiological Protection of International Commission on Radiological Protection and 2nd European Radiation Protection Research Week, ICRP-ERPW 2017, p.83, 10-12.10.2017, Paryż, France

18. Szymanek A., Zyla J., Badie C., Alsbeih G, Polanska J.: Functional genomic data analysis of irradiation impact to ATF3 protein expression. Acta Biochim Polonica vol.63(Suppl.2):168 - 2nd Congress of the Polish Biochemistry, Cell Biology, Biophysics and Bioinformatics , Wrocław Sept. 13–16 2016

19. Zyla J, Marczyk M, Polanska J: Discovering new biologically relevant pathways by Gene Set Enrichment Analysis. Book of Abstracts, p.102, XX Gliwice Scientific Meetings, Gliwice, November 18-19, 2016

20. Zyla J., M. Dolbniak, Badie C., Alsbeih G., Polanska J: Trend control focused integration in modeling genotype-phenotype interactions. 19th Annual International Conference on Research in Computational Molecular Biology RECOMB 2015, Book of abstracts, p. 84-85, 11.04-15.04.2015 Warsaw, POLAND

21. Zyla J, Marczyk M, Polanska J: Searching for radiosensitivity biomarkers by Monte Carlo feature selection and rought sets approach. 8th Symposium of the Polish Bioinformatics Society,PP'11, 17-19 September 2015, Lublin, Poland

22. Zyla J, Badie C, Alsbeih G and Polanska J: Comprehensive multiomics analysis of radiosensitivity phenomena, 2015. International Synthetic and Systems Biology Summer School (SSBSS 2015), 05/07/2015-09/07/2015, Taormina, pp. 34

23. Zyla J, Alsbeih G, Badie C: Comparision of gene set enrichment analysis methods in single nucleotide polymorphism investigation on radiosensitivity phenomena. XIXth Gliwice Scientific Meetings, Book of abstracts, p. 164. 20-21.11.2015, Gliwice, Poland

24. Zyla J., Badie C., Alsbeih G., Polanska J.: Integrative data analysis for DNA damage repair genes related to p53. Acta Biochim Polonica vol.61(Suppl.1):101 - 1st Congress of Biochemistry, Cell Biology, Biophysics and Bioinformatics, Warszawa Sept. 9–12 2014

25. Zyla J. Alsbeih G. Kabacik S. Badie C. Polanska J: Heredity of the G1 and G2 cell cycle phase based on genes in p53 pathway. XVIII Gliwice Scientific Meetings, Book of abstracts, p. 160. 21-22.11.2014, Gliwice, Poland

26. Zyla J. Badie C. Alsbeih G. Polanska J: Discovery of polymorphisms responsible for radiosensitivity - preliminary analysis. Acta Biochim Polonica vol.60(Suppl.1):114. 48th Annual Meeting of the Polish Biochemical Society. 2-5.09.2013. Toruń, POLAND

27. Zyla J: Genome-Wide Association study as a tool in common disease research. XI International PhD Workshop OWD 2013. Conference Archives PTETiS. vol. 33. p.438-441. 2013. ISBN: 978-83-935427-2-7

28. Zyla J. Badie C. Alsbeih G. Polanska J: Gene - cell-cycle correlation in response to ionizing radiation (preliminary analysis). XVII Gliwice Scientific Meetings, Book of abstracts, p. 177. 15-16.11.2013, Gliwice, Poland

29. Zyla J. Finnon P. Bulman R. Bouffler S. Badie C. Polanska J: Novel Strategies for the Discovery of Genetic Signature of Radiosensitivity - Methods for data analysis. XVI Gliwice Scientific Meetings, Book of abstracts, p.55. 16-17.11.2012. Gliwice, Poland

30. Polanska J. Zyla J. Finnon P. Badie C: Novel strategies for the discovery of genes affecting individual cancer risk – data acquisition. XV Gliwice Scientific Meetings, Book of abstracts, p.100. 18-19.11.2011, Gliwice, Poland

31. Zyla J., Domaszewska T., Wiener J. Wykorzystanie analizy wzbogacenia ścieżek sygnałowych w poszukiwaniu endotypów odpowiedzi immunologiczne. Onkologia obliczeniowa i spersonalizowana medycyna - COPM2021. p27 (2021)

32. Aleksandra Gruca, Małgorzata Bach, Paweł Foszner, Joanna Henzel, Mateusz Kania, Michał Kozielski, Justyna Mika, Anna Papież, Joanna Tobiasz, Aleksandra Werner, Joanna Zyla, Jerzy Jaroszewicz, Joanna Polańska, and Marek Sikora: DECODE - zastosowanie analizy statystycznej oraz metod maszynowego uczenia w celu opisu pacjentów chorych na COVID-19 oraz predykcji prawdopodobieństwa wystąpienia choroby COVID-19 na bazie prostych cech klinicznych. Anty-Covid: Informatyka w zwalczaniu Covid-19, June 22-23 2020

33. Anna Papiez, Justyna Mika, Joanna Tobiasz, Joanna Zyla, Marcin Pochrzest, Urszula Augustyniak, Krzysztof Miczkowski, Maciej Papiez, Mateusz Rosiek, Monika Adamczyk-Sowa, Jerzy Jaroszewicz and Joanna Polanska: CORNELIA - System zbierania ankiet dotyczących zaburzeń poznawczych powiązanych z COVID-19, Anty-Covid: Informatyka w zwalczaniu Covid-19, June 22-23 2020

34. Zyla J., Badie C., Alsbeih G., Polanska J.: Integracja prawdopodobieństw dla analiz wyników eksperymentów wysokoprzepustowej biologii molekularnej, III Śląskie Spotkania Naukowe, str. 47, Dzierżno 3-4.06.2016

35. Zyla J: Metody walidacji in silico polimorfizmów pojedynczego nukleotydu, I Seminarium Polskiego Towarzystwa Proteomicznego, Gliwice 4-5 czerwca 2014

36. Zyla J, Papiez A, Zhao J, Qu R, Li X, Kluger Y, Polanska J, Hatzis C, Pusztai L, Marczyk M: Evaluation of zero counts to better understand the discrepancies between bulk and single-cell RNA-Seq platforms. Computational and Structural Biotechnology Journal. 2023, 21:4663-4674

37. Joanna Zyla, Rafal Dziadziuszko, Michal Marczyk, Magdalena Sitkiewicz, Magdalena Szczepanowska, Edoardo Bottoni, Giulia Veronesi, Witold Rzyman, Joanna Polanska, Piotr Widlak: miR122 and miR21 are stable components of miRNA signatures of early lung cancer after validation in three independent cohorts. Journal of Molecular diagnostics. (2024) vol. 26, nr 1, s.37-48. DOI:10.1016/j.jmoldx.2023.09.010

38. Zyla, J., Marczyk, M., Prazuch, W., Sitkiewicz, M., Durawa, A., Jelitto, M., ... & Polanska, J. (2023). Combining Low-Dose Computer-Tomography-Based Radiomics and Serum Metabolomics for Diagnosis of Malignant Nodules in Participants of Lung Cancer Screening Studies. Biomolecules, 14(1), 44.

39. O’Brien, G., Zyla, J., Manola, K., Pagoni, M., Polanska, J., Badie, C.: Identification of Two Novel Mutations in Human Acute Myeloid Leukemia Cases. Leukemia and Lymphoma, 2021, 62(2):454-461, doi: 10.1080/10428194.2020.1832664

40. Kozielski M., Henzel J., Tobiasz J., Gruca A., Foszner P., Zyla J., Bach M., Werner A., Jaroszewicz J., Polanska J., Sikora M: Enhancement of COVID-19 symptom-based screening with quality-based classifier optimisation. Bulletin of the Polish Academy of Sciences: Technical Sciences. e137349 (2021) 10.24425/bpasts.2021.137349

41. Gang Pei, Joanna Zyla , Lichun He , Pedro Moura-Alves, Heidrun Steinle , Philippe Saikali, Laura Lozza , Natalie Nieuwenhuizen, January Weiner, Hans-Joachim Mollenkopf, Kornelia Ellwanger , Christine Arnold , Mojie Duan, Yulia Dagil, Mikhail Pashenkov, Ivo Gomperts Boneca, Thomas A. Kufer, Anca Dorhoi, Stefan H.E. Kaufmann: Cellular stress promotes NOD1/2-dependent inflammation via the endogenous metabolite sphingosine-1-phosphate. EMBO journal e106272 (2021) doi.org/10.15252/embj.2020106272

42. Widłak P., Jelonek K., Kurczyk A., Zyla J., Sitkiewicz M., Bottoni E., Veronesi G., Polanska J., Rzyman W.: Serum metabolite profiles in participants of lung cancer screening study; comparison of two independent cohorts. Cancers, 2021, 13(11):2714; https://doi.org/10.3390/cancers13112714

43. Justyna Mika, Joanna Tobiasz, Joanna Zyla, Anna Papiez, Małgorzata Bach, Aleksandra Werner, Michał Kozielski, Mateusz Kania, Aleksandra Gruca, Damian Piotrowski, Barbara Sobala-Szczygieł, Bożena Włostowska, Paweł Foszner, Marek Sikora, Joanna Polanska*, Jerzy Jaroszewicz: Symptom-based early-stage differentiation between SARS-CoV-2 versus other respiratory tract infections — Upper Silesia pilot study. Scientific Reports, 2021, 11:13580, doi: 10.1038/s41598-021-93046-6

44. Smolarz M., Kurczyk A., Jelonek K., Zyla J., Mielańczyk L., Sitkiewicz M., Pietrowska M., Polanska J., Rzyman W., Widłak P.: The lipid composition of serum-derived small extracellular vesicles in participants of a lung cancer screening study. Cancers 2021, 13(14), 3414; https://doi.org/10.3390/cancers13143414

45. Paterson S, Kar S, Ung SK, Gardener Z, Bergstrom E, Ascough S, Kalyan M, Zyla J, Maertzdorf J, Mollenkopf HJ, Weiner J, Jozwik A, Jarvis H, Jha A, Nicholson BP, Veldman T, Woods CW, Mallia P, Kon OM, Kaufmann SH, Openshaw PJ, Chiu C. Innate-like Gene Expression of Lung-resident Memory CD8+ T-cells During Experimental Human Influenza: A Clinical Study. Am J Respir Crit Care 204(7):826-84 (2021) 10.1164/rccm.202103-0620OC.

46. Domaszewska T, Zyla J, Otto R, Kaufmann SHE and Weiner J (2021) Gene Set Enrichment Analysis Reveals Individual Variability in Host Responses in Tuberculosis Patients. Front. Immunol. 12:694680. doi: 10.3389/fimmu.2021.694680

47. Nieuwenhuizen N., Zyla J., Zedler U., Bandermann S., Abuabed U., Brinkemann V., Kaufmann S.H.E: Weaker protection against tuberculosis in BCG-vaccinated male 129 S2 mice compared to females. Vaccine (2021) 39(50), 7253-7264 doi.org/10.1016/j.vaccine.2021.09.039

48. Henzel, J.; Tobiasz, J.; Kozielski, M.; Bach, M.; Foszner, P.; Gruca, A.; Kania, M.; Mika, J.; Papiez, A.; Werner, A.; Zyla, J.; Jaroszewicz, J.; Polanska, J.; Sikora, M. Screening Support System Based on Patient Survey Data—Case Study on Classification of Initial, Locally Collected COVID-19 Data. Appl. Sci. 2021, 11, 10790. https://doi.org/10.3390/app112210790

49. Marczyk M, Macioszek A, Tobiasz J, Polanska J and Zyla J (2021) Importance of SNP Dependency Correction and Association Integration for Gene Set Analysis in Genome-Wide Association Studies. Front. Genet. 12:767358. doi:10.3389/fgene.2021.767358

50. Grainne O’Brien, Lourdes Cruz Garcia, Joanna Zyla, Natalie Brown, Rosemary Finnon, Joanna Polanska, Christophe Badie: Kras mutations and PU.1 promoter methylation are new pathways in radiation-induced AML, Carcinogenesis, 2020, 41(8):1104-1112, doi: 10.1093/carcin/bgz175

51. Scheuermann Lisa, Pei Gang, Domaszewska Teresa, Zyla Joanna, Oberbeck-Müller Dagmar, Bandermann Silke, Feng Yonghong, Ruiz Moreno Juan Sebastian, Opitz Bastian, Mollenkopf Hans-Joachim, Kaufmann Stefan and Dorhoi Anca. Platelets Restrict the Oxidative Burst in Phagocytes and Facilitate Primary Progressive Tuberculosis, AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2020, 202(5):730-744, doi.org/10.1164/rccm.201910-2063OC

52. Zyla J., Kabacik S., O'Brien G., Wakil S., Al-Harbi N., Kaprio J., Badie C., Polanska J. and Alsbeih G.: Combining CDKN1A gene expression and genome wide SNPs in a twin cohort to gain insight into heritability of individual radiosensitivity, Functional and Integrative Genomics, 2019, 19:575–585 doi:10.1007/s10142-019-00658-3

53. Joanna Zyla; Michal Marczyk; Teresa Domaszewska; Stefan H.E. Kaufmann; Joanna Polanska; January Weiner: Gene set enrichment for reproducible science: comparison of CERNO and eight other algorithms. Bioinformatics, 2019, 35(24):5146-5154, doi: 10.1093/bioinformatics/btz447

54. Weiner J, Maertzdorf J, Sutherland J.S., Duffy F.J., Thompson E., Suliman S., McEwen G., Thiel B., Parida S.K., Zyla J., Hanekom W.A., Mohney R.P., Boom W.H., Mayanja-Kizza H., Howe R., Dockrell H.M., Ottenhoff T.H.M, Scriba T.J., Zak D.E., Walzl G., Kaufmann S.H.E & The GC6-74 consortium: Metabolite changes in blood predict the onset of tuberculosis. Nature Communications. 9(1): 5208 (2018)

55. Zyla J, Marczyk M, Weiner J, Polanska J: Ranking metrics in Gene Set Enrichment Analysis: do they matter? BMC Bioinformatics, 2017, 18(1):256, doi:10.1186/s12859-017-1674-0

56. Zyla J., Bulman R., Badie C., Bouffler S.: Potential protein activity modifications of amino acid variants in the human transcriptome, Acta Biochimica Polonica, 64(1):57-61, 2015

57. Zyla J. Finnon P. Bulman R. Bouffler S. Badie C. Polanska J: Seeking genetic signature of radiosensitivity - a novel method for data analysis in case of small sample sizes, Theoretical Biology and Medical Modelling  2014, 11(S1), doi:10.1186/1742-4682-11-S1-S2

58. January Weiner, Phillip Suwalski, Manuel Holtgrewe, Alexander Rakitko, ..., Joanna Zyla,..., Bettina Heidecker: Increased risk of severe clinical course of COVID-19 in carriers of HLA-C*04:01. EClinicalMedicine (2021) 10.1016/j.eclinm.2021.101099

59. Szumala Kamila, Polanska Joanna, Zyla Joanna, W: Unsupervised investigation of information captured in pathway activity score in scRNA-Seq analysis. In: Bioinformatics and Biomedical Engineering. 10th International Work-Conference, IWBBIO 2023, Meloneras, Gran Canaria, Spain, July 12–14, 2023. Proceedings, Part 2 / Rojas Ignacio [i in.] (red.), Lecture Notes in Bioinformatics - subseries of Lecture Notes in Computer Science, 2023, vol. 13920, Springer, s.180-192, ISBN 978-3-031-34959-1. DOI:10.1007/978-3-031-34960-7_13

60. Mrukwa, A., Marczyk, M., Zyla, J. (2022). Finding Significantly Enriched Cells in Single-Cell RNA Sequencing by Single-Sample Approaches. In: Rojas, I., Valenzuela, O., Rojas, F., Herrera, L.J., Ortuño, F. (eds) Bioinformatics and Biomedical Engineering. IWBBIO 2022. Lecture Notes in Computer Science(), vol 13347. Springer, Cham. https://doi.org/10.1007/978-3-031-07802-6_3

61. Slowik, H., Zyla, J., Marczyk, M. (2022). Investigating Sources of Zeros in 10× Single-Cell RNAseq Data. In: Rojas, I., Valenzuela, O., Rojas, F., Herrera, L.J., Ortuño, F. (eds) Bioinformatics and Biomedical Engineering. IWBBIO 2022. Lecture Notes in Computer Science(), vol 13347. Springer, Cham. https://doi.org/10.1007/978-3-031-07802-6_6

62. Joanna Zyla, Michal Marczyk, Joanna Polanska, W: Artificial intelligence and data processing. The monograph presenting the achievements of the Silesian University of Technology research staff / Kasprowski Paweł (red.), Monografia / Politechnika Śląska, 2022, vol. 954, Politechnika Śląska, s.377-385, ISBN 978-83-7880-859-6

63. Zyla J., Leszczorz K., Polanska J. Robustness of Pathway Enrichment Analysis to Transcriptome-Wide Gene Expression Platform. In: Panuccio G., Rocha M., Fdez-Riverola F., Mohamad M., Casado-Vara R. (eds) Practical Applications of Computational Biology & Bioinformatics, 14th International Conference (PACBB 2020). PACBB 2020. Advances in Intelligent Systems and Computing, vol 1240, pp 176-185. Springer, Cham doi.org/10.1007/978-3-030-54568-0_18

64. Zyla J, Badie C, Albeih G, Polanska J: Heritability in radiation response investigation of H2AX and MDM2. In Proceedings of the XXIII National Conference on Applications of Mathematics in Biology and Medicine, 2017, p. 155-160. Eds. U. Forys, J. Smieja, ISBN: 978-83-932893-3-2

65. Dolbniak M, Zyla J, Kabacik S, Manning G, Badie C, Alsbeih G, Polanska J: Is the identification of SNP-miRNA interactions supporting the prediction of human lymphocyte transcriptional radiation responses? 6th International Conference on Bioinformatics Models, Methods and Algorithms. pp.243-250 Eds. Oscar Pastor, Christine Sinoquet, Ana Fred, Hugo Gamboa and Dirk Elias ISBN: 978-989-758-070-3 BIOSTEC/BIOINFORMATICS 2015, 12-15 January 2015, Lisbon, Portugal